PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013630341.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 353aa    MW: 39342.7 Da    PI: 9.308
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013630341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.71.2e-2154145187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++         +++++qC++k+e+l+kry+ + +++++   ++ +s++++++++ea
  XP_013630341.1  54 CWSLEETIALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPGVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVHYKRMEA 145
                     7*************************************88544444599*************************977999**********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003151117IPR001005SANT/Myb domain
PfamPF138371.1E-1953146No hitNo description
PROSITE profilePS500906.21455115IPR017877Myb-like domain
SMARTSM005957.3E-1462151IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKVAST PAVAKNSRRL PPPCWSLEET  60
IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP KKTAVQCRHK MEKLRKRYRT  120
EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VARSTPRFFN  180
RNGTAGGSSS SGGIRIRIPT GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG  240
VRIQEGEERA GKRGREMMMM MMTTEEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM  300
TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKTARRVSS LPP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630341.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D3B6R10.0A0A0D3B6R1_BRAOL; Uncharacterized protein
STRINGBra000360.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-134Trihelix family protein